- September,
2005
- "PM3BP : A new
semiempirical quantum
model for hydrogen bonded nucleic acid base pairs",
Timothy J. Giese, Ed Sherer,
Christopher
Cramer and Darrin M. York.
- April,
2005
 "The contribution of
phosphate-phosphate
repulsions to the free energy
of DNA bending", Kevin
Range, Evelyn Mayaan, L. James Maher and Darrin M. York. Cover article for
Nucleic Acids Research 33(4) 2005 and Research News.
- January, 2005
- "Multi-scale quantum models for RNA
catalysis", feature article on the York Group
in the Research Bulletin of the
Supercomputing
Institute (Vol.
21, No. 1).
- November 24, 2004
- "New methods
for treatment of long-range electrostatic interactions in quantum
simulations of biochemical reactions", Brent
Gregersen, Kwangho Nam, Jiali Gao and Darrin M. York.
- September 29, 2004
- "Multi-scale quantum
models for
RNA catalysis", the
York Group.
- July 21, 2004
- "Hybrid QM/MM
study of thio effects in transphosphorylation reactions: the role of
solvation", Brent
A. Gregersen, Xabier Lopez and
Darrin M. York.
- April 14, 2004
- "Design and application
of a multi-coefficient
correlation method for dispersion interactions", Timothy J.
Giese and
Darrin M. York.
- Dec 24, 2003
- "Insights into the
regioselectivity and RNA
binding affinity of HIV-1 nucleocapsid protein from linear-scaling
quantum methods", Jana Khandogin, Karin Musier-Forsyth and
Darrin M. York.
- Jul 23, 2003
- "Hybrid QM/MM
study of thio effects in transphosphorylation reactions in solution",
Brent Gregersen, Xabier Lopez and Darrin M. York.
- Jan 22, 2003
- "Spectroscopic and
theoretical characterization of tyrosyl radicals in dipeptides", Idelisa
Ayala, Bridgette Barry, Kevin Range, and Darrin M.
York.
- Jun 12, 2002
- "Computational Methods
for RNA Catalysis", Xabier
Lopez, Jana Khandogin and Darrin M. York.
- Jan 10, 2002
- "New Quantum Indices
for Biological Macromolecules", Jana
Khandogin, Anguang Hu and Darrin M. York.
- Jun 28, 2000
- "New Quantum Methods for Enzyme Reactions
in Solution", the York Group.
- Dec 1, 1999
- "Linear-scaling Electronic Structure
Methods for Biological Macromolecules in Solution",
Darrin M. York.
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