ESP map of HIV-1 SL3 RNA bound NC


The electrostatic potential surface of HIV-1 nucleocapsid protein bound to SL3-RNA (PDB ID: 1A1T). Sulfur atoms from the two zinc knuckles are shown as white spheres. Units are in kT/e (T=300K). Calculations were performed using the PM3 Hamiltonian and a buffer/matrix cutoff of 8/9 Å.